CCRET
A tool to detect copy number variation (CNV). The algorithm models the effects of CNV features in multiple categories..
Topic
Genetic variation
Details
- Operation: Genetic variation analysis
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- Software interface: Command-line user interface; library
- Language: R
- Operating system: Linux; Mac OS X; Microsoft Windows
- License: Not stated Cost: Free
- Version name: 1.13 Maturity: Stable
- Credit: The Swedish Schizophrenia Study consortium: Stephan Ripke, Colm O’Dushlaine, Kimberly Chambert, Jennifer L. Moran, Anna K. Kähler, Susanne Akterin, Sarah Bergen, Patrik K.E. Magnusson, Benjamin M. Neale, Douglas Ruderfer, Menachem Fromer, Edward Scolnick, Shaun Purcell, Steve McCarroll, Pamela Sklar, Christina M. Hultman, and Patrick F. Sullivan.
- Contact: jin_szatkiewicz _at_ med.unc.edu
- Collection: -
Publications
Tzeng JY, Magnusson PK, Sullivan PF; Swedish Schizophrenia Consortium, Szatkiewicz JP "A New Method for Detecting Associations with Rare Copy-Number Variants." PLoS Genet. 2015 Oct 2;11(10):e1005403. https://doi.org/10.1371/journal.pgen.1005403
PMID: 26431523
PMCID: PMC4592002
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