conumee

conumee is a set of processing and plotting methods for making copy-number variation (CNV) analysis using Illumina 450k and EPIC methylation arrays.

Topic

Microarray experiment;Epigenetics;Sequence analysis

Detail

  • Operation: Copy number estimation

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: GNU GPL v2

  • Cost: Free

  • Version name: 1.8.0

  • Credit: -

  • Input: Microarray hybridisation data;IDAT;BED; Text;Sequence coordinates;IDAT;BED;Text

  • Output: Plot;text;nucleic acid features;text

  • Contact: conumee@hovestadt.bio

  • Collection: BioConductor

  • Maturity: -

Publications

  • An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays.
  • Mah CK, et al. An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays. An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays. 2018; 7:(unknown pages). doi: 10.12688/f1000research.16338.1
  • https://doi.org/10.12688/f1000research.16338.1
  • PMID: 31105932
  • PMC: PMC6498745

Download and documentation

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