SNPsnap

A Web server for SNP-based enrichment analysis. It matched SNP sets to calibrate background expectations. The tool identifies sets of randomly drawn SNPs, matched to a set of query SNPs based on allele frequency, number of SNPs in LD, distance to nearest gene, and gene density. Annotation database is available for download at the website.

Topic

Genetics, Genomics, DNA polymorphism, Data submission, annotation and curation

Detail

  • Operation: Genome comparison, Genome annotation

  • Software interface: Web user interface

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  • Credit: Pers TH, Timshel P, Hirschhorn JN.

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Publications

  • SNPsnap: a Web-based tool for identification and annotation of matched SNPs.
  • Pers TH, et al. SNPsnap: a Web-based tool for identification and annotation of matched SNPs. SNPsnap: a Web-based tool for identification and annotation of matched SNPs. 2015; 31:418-20. doi: 10.1093/bioinformatics/btu655
  • https://doi.org/10.1093/bioinformatics/btu655
  • PMID: 25316677
  • PMC: PMC4308663

Download and documentation

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