SMuRF

An R package for selection of regulatory elements, single nucleotide variants (SNVs), single nucleotide polymorphisms (SNPs), and is-regulatory elements (CREs) using random forests.

Topic

Machine learning, Nucleic acids sites, features and motifs, Genetic variation

Detail

  • Operation: Variant filtering

  • Software interface: Command-line interface, R package

  • Language: R

  • License: -

  • Cost: Free

  • Version name: 3.3.2

  • Credit: Guilhamon P, Lupien M.

  • Input: -

  • Output: -

  • Contact: Joshua Mayer joshua.mayer at ttu.edu, Souparno Ghosh souparno.ghosh at ttu.edu

  • Collection: -

  • Maturity: -

Publications

  • SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations.
  • Guilhamon P and Lupien M. SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations. SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations. 2018; 19:454. doi: 10.1186/s12859-018-2501-y
  • https://doi.org/10.1186/s12859-018-2501-y
  • PMID: 30477433
  • PMC: PMC6258448

Download and documentation

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