SINA

SINA (SILVA Incremental Aligner) is a web tool for multiple sequence alignment (MSA) specifically designed for the multiple alignment of ribosomal RNA genes (rRNA). SINA is also able to taxonomically classify the sequences.

Topic

Sequencing;RNA;Nucleic acid structure analysis;Taxonomy;Sequence analysis;Taxonomy

Detail

  • Operation: Sequence alignment analysis;Multiple sequence alignment;Taxonomic classification;Structure-based sequence alignment

  • Software interface: Web user interface

  • Language: C++

  • License: Other

  • Cost: Free for non-commercial usage

  • Version name: 132

  • Credit: The Max Planck Society (MPS).

  • Input: FASTA

  • Output: FASTA;ARB

  • Contact: contact@arb-silva.de | epruesse@mpi-bremen.de

  • Collection: SINA

  • Maturity: Mature

Publications

  • SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
  • Pruesse E, et al. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. 2012; 28:1823-9. doi: 10.1093/bioinformatics/bts252
  • https://doi.org/10.1093/bioinformatics/bts252
  • PMID: 22556368
  • PMC: PMC3389763

Download and documentation

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