QOMA

Multiple sequence alignment of proteins sequences, using k-partite graph. The algorithm is independent of thr order of sequences.

Topic

Sequences

Detail

  • Operation: Multiple alignment;Alignment;Analysis;Sequence alignment;Multiple sequence alignment

  • Software interface: Command-line user interface

  • Language: C

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: -

  • Collection: -

  • Maturity: -

Publications

  • QOMA: quasi-optimal multiple alignment of protein sequences.
  • Zhang X and Kahveci T. QOMA: quasi-optimal multiple alignment of protein sequences. QOMA: quasi-optimal multiple alignment of protein sequences. 2007; 23:162-8. doi: 10.1093/bioinformatics/btl590
  • https://doi.org/10.1093/bioinformatics/btl590
  • PMID: 17121778
  • PMC: -
  • QOMA2: Optimizing the alignment of many sequences.
  • Kaushik A, et al. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. 2015; 3:e1332. doi: 10.7717/peerj.1332
  • https://doi.org/10.1109/BIBE.2007.4375649
  • PMID: -
  • PMC: -
  • A NEW APPROACH FOR ALIGNMENT OF MULTIPLE PROTEINS
  • Kaushik A, et al. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. 2015; 3:e1332. doi: 10.7717/peerj.1332
  • https://doi.org/10.1142/9789812701626_0031
  • PMID: -
  • PMC: -

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