MyHits

MyHits is a web-based service for annotating and analyzing protein sequences and protein domain signatures. The MyHits site includes pattern and profile search tools, such as BLASTP/PSI-BLAST, PFSEARCH, HMMER3, motif scan tools, database query tools, sequence alignment tools, classification tools, and others, such as Reformat MSA, Reformat SEQ, Dotlet, and ProtoGene. Free registration allows users to upload their own sequences and motifs to private databases.

Topic

Protein folds and structural domains;Proteins;Database management

Detail

  • Operation: Protein fold recognition;Protein domain recognition

  • Software interface: Web user interface

  • Language: Javascript

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: European Commission FP6 Program, under the thematic area ‘Life sciences, genomics and biotechnology for health’, the Swiss National Science Foundation, the Cancer Research Institute, the Swiss Institute of Bioinformatics.

  • Input: -

  • Output: -

  • Contact: Marco Pagni marco.pagni@isb-sib.ch

  • Collection: -

  • Maturity: -

Publications

  • MyHits: a new interactive resource for protein annotation and domain identification.
  • Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Falquet L. MyHits: a new interactive resource for protein annotation and domain identification. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W332-5. doi: 10.1093/nar/gkh479. PMID: 15215405; PMCID: PMC441617.
  • https://doi.org/10.1093/nar/gkh479
  • PMID: 15215405
  • PMC: PMC441617
  • MyHits: improvements to an interactive resource for analyzing protein sequences
  • Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L. MyHits: improvements to an interactive resource for analyzing protein sequences. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W433-7. doi: 10.1093/nar/gkm352. Epub 2007 Jun 1. PMID: 17545200; PMCID: PMC1933190.
  • https://doi.org/10.1093/nar/gkm352
  • PMID: 17545200
  • PMC: PMC1933190

Download and documentation

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