DeNovoGUI

DeNovoGUI is a tool to run PepNovo+, DirecTag, PepNovo+, and pNovo+de novo MS/MS spectra sequencing tools.

Topic

Proteomics;Proteomics experiment

Detail

  • Operation: Protein identification;Validation of peptide-spectrum matches;Peptide identification;de Novo sequencing

  • Software interface: Command-line user interface;Graphical user interface

  • Language: Java

  • License: Apache License v2

  • Cost: Free

  • Version name: 1.16.6

  • Credit: The Max Planck Society, the Austrian Science FundingAgency, Ghent University (Multidisciplinary Research Partnership “Bioinformatics:from nucleotides to networks”), the European Union 7th Framework Program, the Research Council of Norway.

  • Input: MGF (Mascot Generic File format)

  • Output: TXT

  • Contact: marc.vaudel@biomed.uib.no

  • Collection: -

  • Maturity: -

Publications

  • DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.
  • Muth T, et al. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. 2014; 13:1143-6. doi: 10.1021/pr4008078
  • https://doi.org/10.1021/pr4008078
  • PMID: 24295440
  • PMC: PMC3923451

Download and documentation

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