CRISPRCasFinder

CRISPRCasFinder is a tool to find CRISPR (clustered regularly interspaced short palindromic repeats) arrays and detect Cas proteins. The CRISPRCasFinder algorithm aids validation using a rating system, predicts the orientation of CRISPRs, and detects and types Cas protein based on the latest classification.

Topic

Model organisms;Transcription factors and regulatory sites;Sequence composition, complexity and repeats;DNA polymorphism;Gene expression

Detail

  • Operation: Repeat sequence detection;Sequence motif recognition;Clustering;Repeat sequence analysis

  • Software interface: Command-line user interface;Web user interface

  • Language: Perl

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 4.2.20

  • Credit: Institut Français de Bioinformatique (IFB), European Defense Agency Research and Technology project Bioforensics for Biodefence, ANR.

  • Input: FASTA

  • Output: -

  • Contact: (General) christine.pourcel@i2bc.paris-saclay.fr | (Technical) pierre-albert.charbit@i2bc.paris-saclay.fr | mtouchon@pasteur.fr

  • Collection: -

  • Maturity: Mature

Publications

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Download and documentation

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