AbCD
A web tool that provides pre-estimated effective sample sizes, specific to each minor allele frequency (MAF) category, for designs with arbitrary coverage (0.5-30X) and sample size (20-20,000), and for four major ethnic groups (Europeans, Africans, Asians and African Americans).
Topic
Population genetics
Detail
Operation: Data retrieval
Software interface: Web user interface, command-line interface
Language: Java
License: -
Cost: Free
Version name: -
Credit: Kang J, Huang KC, Xu Z, Wang Y, Abecasis GR, Li Y.
Input: -
Output: -
Contact: yunli at med.unc.edu, Jian Kang jiankang at umich.edu
Collection: -
Maturity: -
Publications
- AbCD: arbitrary coverage design for sequencing-based genetic studies.
- Kang J, et al. AbCD: arbitrary coverage design for sequencing-based genetic studies. AbCD: arbitrary coverage design for sequencing-based genetic studies. 2013; 29:799-801. doi: 10.1093/bioinformatics/btt041
- https://doi.org/10.1093/bioinformatics/btt041
- PMID: 23357921
- PMC: PMC3597143
Download and documentation
Documentation: https://yunliweb.its.unc.edu/abcd.tutorial.html
Home page: https://yunliweb.its.unc.edu/AbCD.html
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