AbCD

A web tool that provides pre-estimated effective sample sizes, specific to each minor allele frequency (MAF) category, for designs with arbitrary coverage (0.5-30X) and sample size (20-20,000), and for four major ethnic groups (Europeans, Africans, Asians and African Americans).

Topic

Population genetics

Detail

  • Operation: Data retrieval

  • Software interface: Web user interface, command-line interface

  • Language: Java

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: Kang J, Huang KC, Xu Z, Wang Y, Abecasis GR, Li Y.

  • Input: -

  • Output: -

  • Contact: yunli at med.unc.edu, Jian Kang jiankang at umich.edu

  • Collection: -

  • Maturity: -

Publications

  • AbCD: arbitrary coverage design for sequencing-based genetic studies.
  • Kang J, et al. AbCD: arbitrary coverage design for sequencing-based genetic studies. AbCD: arbitrary coverage design for sequencing-based genetic studies. 2013; 29:799-801. doi: 10.1093/bioinformatics/btt041
  • https://doi.org/10.1093/bioinformatics/btt041
  • PMID: 23357921
  • PMC: PMC3597143

Download and documentation


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